>>> matio 1.5.23 Extracting gzip -d -c /tmp/instance-2/dl/matio/matio-1.5.23.tar.gz | tar --strip-components=1 -C /tmp/instance-2/output-1/build/matio-1.5.23 -xf - >>> matio 1.5.23 Patching >>> matio 1.5.23 Updating config.sub and config.guess for file in config.guess config.sub; do for i in $(find /tmp/instance-2/output-1/build/matio-1.5.23 -name $file); do cp support/gnuconfig/$file $i; done; done >>> matio 1.5.23 Patching libtool patching file /tmp/instance-2/output-1/build/matio-1.5.23/config/ltmain.sh Hunk #1 succeeded at 2694 (offset 7 lines). Hunk #2 succeeded at 4284 (offset 7 lines). Hunk #3 succeeded at 6579 (offset 25 lines). Hunk #4 succeeded at 6589 (offset 25 lines). Hunk #5 succeeded at 6882 (offset 25 lines). Hunk #6 succeeded at 7174 (offset 25 lines). Hunk #7 succeeded at 8146 (offset 34 lines). Hunk #8 succeeded at 10778 (offset 68 lines). >>> matio 1.5.23 Configuring (cd /tmp/instance-2/output-1/build/matio-1.5.23/ && rm -rf config.cache && PATH="/tmp/instance-2/output-1/host/bin:/tmp/instance-2/output-1/host/sbin:/home/autobuild/make:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" AR="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc-ar" AS="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-as" LD="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-ld" NM="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc-nm" CC="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc" GCC="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc" CPP="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-cpp" CXX="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-g++" FC="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gfortran" F77="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gfortran" RANLIB="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc-ranlib" READELF="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-readelf" STRIP="/bin/true" OBJCOPY="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-objcopy" OBJDUMP="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-objdump" AR_FOR_BUILD="/usr/bin/ar" AS_FOR_BUILD="/usr/bin/as" CC_FOR_BUILD="/usr/bin/gcc" GCC_FOR_BUILD="/usr/bin/gcc" CXX_FOR_BUILD="/usr/bin/g++" LD_FOR_BUILD="/usr/bin/ld" CPPFLAGS_FOR_BUILD="-I/tmp/instance-2/output-1/host/include" CFLAGS_FOR_BUILD="-O2 -I/tmp/instance-2/output-1/host/include" CXXFLAGS_FOR_BUILD="-O2 -I/tmp/instance-2/output-1/host/include" LDFLAGS_FOR_BUILD="-L/tmp/instance-2/output-1/host/lib -Wl,-rpath,/tmp/instance-2/output-1/host/lib" FCFLAGS_FOR_BUILD="" DEFAULT_ASSEMBLER="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-as" DEFAULT_LINKER="/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-ld" CPPFLAGS="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64" CFLAGS="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 " CXXFLAGS="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 " LDFLAGS="" FCFLAGS=" -Ofast -g0" FFLAGS=" -Ofast -g0" PKG_CONFIG="/tmp/instance-2/output-1/host/bin/pkg-config" STAGING_DIR="/tmp/instance-2/output-1/host/nios2-buildroot-linux-gnu/sysroot" INTLTOOL_PERL=/usr/bin/perl CXX=no ac_cv_lbl_unaligned_fail=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_memcmp_working=yes ac_cv_have_decl_malloc=yes gl_cv_func_malloc_0_nonnull=yes ac_cv_func_malloc_0_nonnull=yes ac_cv_func_calloc_0_nonnull=yes ac_cv_func_realloc_0_nonnull=yes lt_cv_sys_lib_search_path_spec="" ac_cv_c_bigendian=no ac_cv_va_copy=yes CONFIG_SITE=/dev/null ./configure --target=nios2-buildroot-linux-gnu --host=nios2-buildroot-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --localstatedir=/var --program-prefix="" --disable-gtk-doc --disable-gtk-doc-html --disable-doc --disable-docs --disable-documentation --with-xmlto=no --with-fop=no --disable-dependency-tracking --enable-ipv6 --disable-nls --disable-static --enable-shared --disable-mat73 --enable-extended-sparse ) configure: WARNING: unrecognized options: --disable-gtk-doc, --disable-gtk-doc-html, --disable-doc, --disable-docs, --disable-documentation, --with-xmlto, --with-fop, --disable-dependency-tracking, --enable-ipv6, --disable-nls checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for nios2-buildroot-linux-gnu-strip... /bin/true checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-pc-linux-gnu checking host system type... nios2-buildroot-linux-gnu checking for nios2-buildroot-linux-gnu-pgcc... /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc accepts -g... yes checking for /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc option to accept ISO C89... none needed checking whether /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc understands -c and -o together... yes checking debug mode... no checking profile mode... no checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc... /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-ld checking if the linker (/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc-nm checking the name lister (/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc-nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to nios2-buildroot-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-ld option to reload object files... -r checking for nios2-buildroot-linux-gnu-objdump... /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for nios2-buildroot-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for nios2-buildroot-linux-gnu-ar... /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc-ar checking for archiver @FILE support... @ checking for nios2-buildroot-linux-gnu-strip... (cached) /bin/true checking for nios2-buildroot-linux-gnu-ranlib... /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc-ranlib checking command to parse /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc-nm output from /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for nios2-buildroot-linux-gnu-mt... no checking for mt... mt configure: WARNING: using cross tools not prefixed with host triplet checking if mt is a manifest tool... no checking how to run the C preprocessor... /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-cpp checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc static flag -static works... yes checking if /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc supports -c -o file.o... yes checking if /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc linker (/tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking whether make sets $(MAKE)... (cached) yes checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for large file support in 32-bit OS... yes checking for fseeko... yes checking for ftello... yes checking for fseeko64... yes checking for ftello64... yes checking for _fseeki64... no checking for _ftelli64... no checking for pow in -lm... yes checking for stdarg.h... yes checking for varargs.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking intsafe.h usability... no checking intsafe.h presence... no checking for intsafe.h... no checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for struct lconv.decimal_point... yes checking for struct lconv.thousands_sep... yes checking for ptrdiff_t... yes checking for localeconv... yes checking for getopt_long... internal checking size of double... 8 checking size of float... 4 checking size of long long... 8 checking size of long... 4 checking size of int... 4 checking size of short... 2 checking size of char... 1 checking size of void *... 4 checking size of off_t... 8 checking size of size_t... 4 checking for mat_int64_t... int64_t checking for mat_uint64_t... uint64_t checking for mat_int32_t... int32_t checking for mat_uint32_t... uint32_t checking for mat_int16_t... int16_t checking for mat_uint16_t... uint16_t checking for mat_int8_t... int8_t checking for mat_uint8_t... uint8_t checking for off_t... yes checking for off64_t... no checking for long double... yes checking for unsigned long long int... yes checking for long long int... yes checking for unsigned long long int... (cached) yes checking for size_t... yes checking for intmax_t... yes checking for uintmax_t... yes checking for uintptr_t... yes checking for va_copy() function... (cached) no (using fallback implementation) checking for vsnprintf()... yes checking for snprintf()... yes checking for vasprintf()... yes checking for asprintf()... yes checking for matlab... no checking for zlib Library... -lz checking for HDF5 software... no checking enable MAT v7.3 file support... no checking for default MAT file version... MAT_FT_MAT5 checking enable extended sparse types... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating matio.pc config.status: creating src/Makefile config.status: creating getopt/Makefile config.status: creating tools/Makefile config.status: creating test/Makefile config.status: creating documentation/Makefile config.status: creating src/matioConfig.h config.status: creating src/matio_pubconf.h config.status: executing libtool commands config.status: executing test/atconfig commands configure: WARNING: unrecognized options: --disable-gtk-doc, --disable-gtk-doc-html, --disable-doc, --disable-docs, --disable-documentation, --with-xmlto, --with-fop, --disable-dependency-tracking, --enable-ipv6, --disable-nls MATIO Configuration Summary ============================================================== C Compiler: /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc CFLAGS: -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 Shared Libraries: yes Static Libraries: no default MAT version: MAT_FT_MAT5 Features -------------------------------------------- MAT v7.3 file support: no Extended sparse support: yes Packages -------------------------------------------- zlib: -lz hdf5: MATLAB: >>> matio 1.5.23 Building PATH="/tmp/instance-2/output-1/host/bin:/tmp/instance-2/output-1/host/sbin:/home/autobuild/make:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" /home/autobuild/make/make -j1 -C /tmp/instance-2/output-1/build/matio-1.5.23/ make[1]: Entering directory '/tmp/instance-2/output-1/build/matio-1.5.23' Making all in src make[2]: Entering directory '/tmp/instance-2/output-1/build/matio-1.5.23/src' /home/autobuild/make/make all-am make[3]: Entering directory '/tmp/instance-2/output-1/build/matio-1.5.23/src' /bin/bash ../libtool --tag=CC --mode=compile /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 -c -o snprintf.lo snprintf.c libtool: compile: /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 -c snprintf.c -fPIC -DPIC -o .libs/snprintf.o /bin/bash ../libtool --tag=CC --mode=compile /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 -c -o endian.lo endian.c libtool: compile: /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 -c endian.c -fPIC -DPIC -o .libs/endian.o /bin/bash ../libtool --tag=CC --mode=compile /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 -c -o io.lo io.c libtool: compile: /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 -c io.c -fPIC -DPIC -o .libs/io.o io.c:45: warning: "va_copy" redefined 45 | #define va_copy(d, s) memcpy(&(d), &(s), sizeof(va_list)) | In file included from matio.h:38, from matio_private.h:36, from io.c:31: /tmp/instance-2/output-1/host/lib/gcc/nios2-buildroot-linux-gnu/11.3.0/include/stdarg.h:52: note: this is the location of the previous definition 52 | #define va_copy(d,s) __builtin_va_copy(d,s) | /bin/bash ../libtool --tag=CC --mode=compile /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 -c -o inflate.lo inflate.c libtool: compile: /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 -c inflate.c -fPIC -DPIC -o .libs/inflate.o /bin/bash ../libtool --tag=CC --mode=compile /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 -c -o read_data.lo read_data.c libtool: compile: /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 -c read_data.c -fPIC -DPIC -o .libs/read_data.o /bin/bash ../libtool --tag=CC --mode=compile /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 -c -o mat5.lo mat5.c libtool: compile: /tmp/instance-2/output-1/host/bin/nios2-buildroot-linux-gnu-gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Ofast -g0 -c mat5.c -fPIC -DPIC -o .libs/mat5.o /tmp/ccbkgt2O.s: Assembler messages: /tmp/ccbkgt2O.s:172576: Error: branch offset out of range /tmp/ccbkgt2O.s: Fatal error: branch relaxation failed make[3]: *** [Makefile:498: mat5.lo] Error 1 make[3]: Leaving directory '/tmp/instance-2/output-1/build/matio-1.5.23/src' make[2]: *** [Makefile:390: all] Error 2 make[2]: Leaving directory '/tmp/instance-2/output-1/build/matio-1.5.23/src' make[1]: *** [Makefile:518: all-recursive] Error 1 make[1]: Leaving directory '/tmp/instance-2/output-1/build/matio-1.5.23' make: *** [package/pkg-generic.mk:293: /tmp/instance-2/output-1/build/matio-1.5.23/.stamp_built] Error 2 make: Leaving directory '/tmp/instance-2/buildroot'