>>> openmpi 4.0.0 Downloading wget --passive-ftp -nd -t 3 --no-check-certificate -O '/tmp/instance-1/output-1/build/.openmpi-4.0.0.tar.bz2.lH7Wku/output' 'https://www.open-mpi.org/software/ompi/v4.0/downloads/openmpi-4.0.0.tar.bz2' --2021-07-30 16:53:09-- https://www.open-mpi.org/software/ompi/v4.0/downloads/openmpi-4.0.0.tar.bz2 Resolving www.open-mpi.org (www.open-mpi.org)... 2600:9000:21a8:1400:6:3012:11c0:93a1, 2600:9000:21a8:6600:6:3012:11c0:93a1, 2600:9000:21a8:fe00:6:3012:11c0:93a1, ... Connecting to www.open-mpi.org (www.open-mpi.org)|2600:9000:21a8:1400:6:3012:11c0:93a1|:443... connected. HTTP request sent, awaiting response... 301 Moved Permanently Location: https://download.open-mpi.org/release/open-mpi/v4.0/openmpi-4.0.0.tar.bz2 [following] --2021-07-30 16:53:10-- https://download.open-mpi.org/release/open-mpi/v4.0/openmpi-4.0.0.tar.bz2 Resolving download.open-mpi.org (download.open-mpi.org)... 2600:9000:21a8:b400:16:d6ed:ec80:93a1, 2600:9000:21a8:bc00:16:d6ed:ec80:93a1, 2600:9000:21a8:5400:16:d6ed:ec80:93a1, ... Connecting to download.open-mpi.org (download.open-mpi.org)|2600:9000:21a8:b400:16:d6ed:ec80:93a1|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 9812193 (9.4M) [binary/octet-stream] Saving to: '/tmp/instance-1/output-1/build/.openmpi-4.0.0.tar.bz2.lH7Wku/output' 0K .......... .......... .......... .......... .......... 0% 8.50M 1s 50K .......... .......... .......... .......... .......... 1% 9.45M 1s 100K .......... .......... .......... .......... .......... 1% 187M 1s 150K .......... .......... .......... .......... .......... 2% 24.1M 1s 200K .......... .......... .......... .......... .......... 2% 261M 0s 250K .......... .......... .......... .......... .......... 3% 8.08M 1s 300K .......... .......... .......... .......... .......... 3% 206M 1s 350K .......... .......... .......... .......... .......... 4% 188M 0s 400K .......... .......... .......... .......... .......... 4% 243M 0s 450K .......... .......... .......... .......... .......... 5% 240M 0s 500K .......... .......... .......... .......... .......... 5% 212M 0s 550K .......... .......... .......... 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.......... 98% 207M 0s 9450K .......... .......... .......... .......... .......... 99% 221M 0s 9500K .......... .......... .......... .......... .......... 99% 197M 0s 9550K .......... .......... .......... .. 100% 192M=0.1s 2021-07-30 16:53:10 (68.0 MB/s) - '/tmp/instance-1/output-1/build/.openmpi-4.0.0.tar.bz2.lH7Wku/output' saved [9812193/9812193] openmpi-4.0.0.tar.bz2: OK (md5: e3da67df1e968c8798827e0e5fe9a510) openmpi-4.0.0.tar.bz2: OK (sha1: fee1d0287abfb150bae16957de342752c9bdd4e8) openmpi-4.0.0.tar.bz2: OK (sha256: 2f0b8a36cfeb7354b45dda3c5425ef8393c9b04115570b615213faaa3f97366b) >>> openmpi 4.0.0 Extracting bzcat /tmp/instance-1/dl/openmpi/openmpi-4.0.0.tar.bz2 | tar --strip-components=1 -C /tmp/instance-1/output-1/build/openmpi-4.0.0 -xf - >>> openmpi 4.0.0 Patching cp package/openmpi/openmpi-mips32-fortran.cache /tmp/instance-1/output-1/build/openmpi-4.0.0/openmpi-config.cache >>> openmpi 4.0.0 Updating config.sub and config.guess for file in config.guess config.sub; do for i in $(find /tmp/instance-1/output-1/build/openmpi-4.0.0 -name $file); do cp support/gnuconfig/$file $i; done; done >>> openmpi 4.0.0 Patching libtool patching file /tmp/instance-1/output-1/build/openmpi-4.0.0/config/ltmain.sh Hunk #1 succeeded at 2694 (offset 7 lines). Hunk #2 succeeded at 4284 (offset 7 lines). Hunk #3 succeeded at 6579 (offset 25 lines). Hunk #4 succeeded at 6589 (offset 25 lines). Hunk #5 succeeded at 6882 (offset 25 lines). Hunk #6 succeeded at 7174 (offset 25 lines). Hunk #7 succeeded at 8146 (offset 34 lines). Hunk #8 succeeded at 10775 (offset 65 lines). patching file /tmp/instance-1/output-1/build/openmpi-4.0.0/opal/mca/event/libevent2022/libevent/ltmain.sh Hunk #1 succeeded at 2694 (offset 7 lines). Hunk #2 succeeded at 4284 (offset 7 lines). Hunk #3 succeeded at 6579 (offset 25 lines). Hunk #4 succeeded at 6589 (offset 25 lines). Hunk #5 succeeded at 6882 (offset 25 lines). Hunk #6 succeeded at 7174 (offset 25 lines). Hunk #7 succeeded at 8140 (offset 28 lines). Hunk #8 succeeded at 10769 (offset 59 lines). patching file /tmp/instance-1/output-1/build/openmpi-4.0.0/opal/mca/pmix/pmix3x/pmix/config/ltmain.sh Hunk #1 succeeded at 2694 (offset 7 lines). Hunk #2 succeeded at 4284 (offset 7 lines). Hunk #3 succeeded at 6579 (offset 25 lines). Hunk #4 succeeded at 6589 (offset 25 lines). Hunk #5 succeeded at 6882 (offset 25 lines). Hunk #6 succeeded at 7174 (offset 25 lines). Hunk #7 succeeded at 8146 (offset 34 lines). Hunk #8 succeeded at 10775 (offset 65 lines). patching file /tmp/instance-1/output-1/build/openmpi-4.0.0/ompi/mca/io/romio321/romio/confdb/ltmain.sh Hunk #1 succeeded at 2694 (offset 7 lines). Hunk #2 succeeded at 4284 (offset 7 lines). Hunk #3 succeeded at 6579 (offset 25 lines). Hunk #4 succeeded at 6589 (offset 25 lines). Hunk #5 succeeded at 6882 (offset 25 lines). Hunk #6 succeeded at 7174 (offset 25 lines). Hunk #7 succeeded at 8140 (offset 28 lines). Hunk #8 succeeded at 10769 (offset 59 lines). >>> openmpi 4.0.0 Configuring (cd /tmp/instance-1/output-1/build/openmpi-4.0.0/ && rm -rf config.cache && PATH="/tmp/instance-1/output-1/host/bin:/tmp/instance-1/output-1/host/sbin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin" AR="/tmp/instance-1/output-1/host/bin/mipsel-linux-ar" AS="/tmp/instance-1/output-1/host/bin/mipsel-linux-as" LD="/tmp/instance-1/output-1/host/bin/mipsel-linux-ld" NM="/tmp/instance-1/output-1/host/bin/mipsel-linux-nm" CC="/tmp/instance-1/output-1/host/bin/mipsel-linux-gcc" GCC="/tmp/instance-1/output-1/host/bin/mipsel-linux-gcc" CPP="/tmp/instance-1/output-1/host/bin/mipsel-linux-cpp" CXX="/tmp/instance-1/output-1/host/bin/mipsel-linux-g++" FC="/tmp/instance-1/output-1/host/bin/mipsel-linux-gfortran" F77="/tmp/instance-1/output-1/host/bin/mipsel-linux-gfortran" RANLIB="/tmp/instance-1/output-1/host/bin/mipsel-linux-ranlib" READELF="/tmp/instance-1/output-1/host/bin/mipsel-linux-readelf" STRIP="/tmp/instance-1/output-1/host/bin/mipsel-linux-strip" OBJCOPY="/tmp/instance-1/output-1/host/bin/mipsel-linux-objcopy" OBJDUMP="/tmp/instance-1/output-1/host/bin/mipsel-linux-objdump" AR_FOR_BUILD="/usr/bin/ar" AS_FOR_BUILD="/usr/bin/as" CC_FOR_BUILD="/usr/bin/gcc" GCC_FOR_BUILD="/usr/bin/gcc" CXX_FOR_BUILD="/usr/bin/g++" LD_FOR_BUILD="/usr/bin/ld" CPPFLAGS_FOR_BUILD="-I/tmp/instance-1/output-1/host/include" CFLAGS_FOR_BUILD="-O2 -I/tmp/instance-1/output-1/host/include" CXXFLAGS_FOR_BUILD="-O2 -I/tmp/instance-1/output-1/host/include" LDFLAGS_FOR_BUILD="-L/tmp/instance-1/output-1/host/lib -Wl,-rpath,/tmp/instance-1/output-1/host/lib" FCFLAGS_FOR_BUILD="" DEFAULT_ASSEMBLER="/tmp/instance-1/output-1/host/bin/mipsel-linux-as" DEFAULT_LINKER="/tmp/instance-1/output-1/host/bin/mipsel-linux-ld" CPPFLAGS="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64" CFLAGS="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Os -g0 -D_FORTIFY_SOURCE=1" CXXFLAGS="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Os -g0 -D_FORTIFY_SOURCE=1" LDFLAGS="" FCFLAGS=" -Os -g0" FFLAGS=" -Os -g0" PKG_CONFIG="/tmp/instance-1/output-1/host/bin/pkg-config" STAGING_DIR="/tmp/instance-1/output-1/host/mipsel-buildroot-linux-gnu/sysroot" INTLTOOL_PERL=/usr/bin/perl ac_cv_lbl_unaligned_fail=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_memcmp_working=yes ac_cv_have_decl_malloc=yes gl_cv_func_malloc_0_nonnull=yes ac_cv_func_malloc_0_nonnull=yes ac_cv_func_calloc_0_nonnull=yes ac_cv_func_realloc_0_nonnull=yes lt_cv_sys_lib_search_path_spec="" ac_cv_c_bigendian=no CFLAGS="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Os -g0 -D_FORTIFY_SOURCE=1" CONFIG_SITE=/dev/null ./configure --target=mipsel-buildroot-linux-gnu --host=mipsel-buildroot-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --localstatedir=/var --program-prefix="" --disable-gtk-doc --disable-gtk-doc-html --disable-doc --disable-docs --disable-documentation --with-xmlto=no --with-fop=no --disable-dependency-tracking --enable-ipv6 --disable-nls --disable-static --enable-shared --enable-mpi-fortran=yes --cache-file=/tmp/instance-1/output-1/build/openmpi-4.0.0/openmpi-config.cache ) configure: WARNING: unrecognized options: --disable-gtk-doc, --disable-gtk-doc-html, --disable-doc, --disable-docs, --disable-documentation, --with-xmlto, --with-fop, --disable-nls configure: loading cache /tmp/instance-1/output-1/build/openmpi-4.0.0/openmpi-config.cache checking for perl... /usr/bin/perl ============================================================================ == Configuring Open MPI ============================================================================ *** Startup tests checking build system type... x86_64-pc-linux-gnu checking host system type... mipsel-buildroot-linux-gnu checking target system type... mipsel-buildroot-linux-gnu checking for mipsel-buildroot-linux-gnu-gcc... /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc accepts -g... yes checking for /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc option to accept ISO C89... none needed checking whether /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc understands -c and -o together... yes checking how to run the C preprocessor... /tmp/instance-1/output-1/host/bin/mipsel-linux-cpp checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mipsel-buildroot-linux-gnu-strip... /tmp/instance-1/output-1/host/bin/mipsel-linux-strip checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking whether UID '1000' is supported by ustar format... yes checking whether GID '1000' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking dependency style of /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc... none checking whether make supports nested variables... (cached) yes *** Checking versions checking for repo version... v4.0.0 checking Open MPI version... 4.0.0 checking Open MPI release date... Nov 12, 2018 checking Open MPI repository version... v4.0.0 checking for repo version... v4.0.0 checking Open MPI Run-Time Environment version... 4.0.0 checking Open MPI Run-Time Environment release date... Nov 12, 2018 checking Open MPI Run-Time Environment repository version... v4.0.0 checking for repo version... v4.0.0 checking Open SHMEM version... 4.0.0 checking Open SHMEM release date... Nov 12, 2018 checking Open SHMEM repository version... v4.0.0 checking for repo version... v4.0.0 checking Open Portable Access Layer version... 4.0.0 checking Open Portable Access Layer release date... Nov 12, 2018 checking Open Portable Access Layer repository version... v4.0.0 checking for bootstrap Autoconf version... 2.69 checking for bootstrap Automake version... 1.15 checking for boostrap Libtool version... 2.4.6 *** Initialization, setup configure: builddir: /tmp/instance-1/output-1/build/openmpi-4.0.0 configure: srcdir: /tmp/instance-1/output-1/build/openmpi-4.0.0 installing to directory "/usr" *** OPAL Configuration options checking if want to run code coverage... no checking if want to compile with branch probabilities... no checking if want to debug memory usage... no checking if want to profile memory usage... no checking if want developer-level compiler pickyness... no checking if want developer-level debugging code... no checking if want to developer-level timing framework... no checking if want to install project-internal header files... no checking if want pretty-print stacktrace... yes checking if want pty support... yes checking if want weak symbol support... yes checking if want dlopen support... yes checking for default value of mca_base_component_show_load_errors... enabled by default checking if want heterogeneous support... no checking if word-sized integers must be word-size aligned... yes checking if want IPv6 support... yes checking if want package/brand string... Open MPI autobuild@ns3196006 Distribution checking if want ident string... 4.0.0 checking if want to use an alternative checksum algo for messages... no checking maximum length of processor name... 256 checking maximum length of error string... 256 checking maximum length of object name... 64 checking maximum length of info key... 36 checking maximum length of info val... 256 checking maximum length of port name... 1024 checking maximum length of datarep string... 128 checking if want getpwuid support... yes checking for zlib in... (default search paths) checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes looking for library without search path checking for library containing deflate... -lz checking if libz requires libnl v1 or v3... not a dynamic executable checking will zlib support be built... yes checking __NetBSD__... no checking __FreeBSD__... no checking __OpenBSD__... no checking __DragonFly__... no checking __386BSD__... no checking __bsdi__... no checking __APPLE__... no checking __linux__... yes checking __sun__... no checking __sun... no checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking for struct sockaddr_in... yes checking if --with-cuda is set... not set (--with-cuda=) checking whether CU_POINTER_ATTRIBUTE_SYNC_MEMOPS is declared... no checking whether cuPointerGetAttributes is declared... no checking if have cuda support... no checking if user requested internal PMIx support()... no checking for pmix.h in /usr... not found checking for pmix.h in /usr/include... not found checking PMIx version to be used... internal *** ORTE Configuration options checking if want orterun "--prefix" behavior to be enabled by default... no *** OMPI Configuration options checking if want compile-time warnings inside of mpi.h... yes checking if want sparse process groups... no checking if want peruse support... no checking if want Fortran MPI bindings... yes (default) checking if want C++ bindings... no checking if want MPI::SEEK_SET support... yes checking if want run-time MPI parameter checking... runtime *** OSHMEM Configuration options checking if want oshmem... yes checking if want SGI/Quadrics compatibility mode... yes checking if want OSHMEM API parameter checking... always checking for on_exit... yes checking if want pshmem... yes checking if want to build OSHMEM fortran bindings... yes no checking if want custom libmpi(_FOO) name... mpi checking if want wrapper compiler rpath support... yes checking if want wrapper compiler runpath support... yes ============================================================================ == Compiler and preprocessor tests ============================================================================ *** C compiler and preprocessor checking for mipsel-buildroot-linux-gnu-gcc... (cached) /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc accepts -g... (cached) yes checking for /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc option to accept ISO C89... (cached) none needed checking whether /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc understands -c and -o together... (cached) yes checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc requires a flag for C11... no configure: verifying /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports C11 without a flag checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports C11 _Thread_local... yes checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports C11 atomic variables... yes checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports C11 _Atomic keyword... yes checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports C11 _Generic keyword... yes checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports C11 _Static_assert... yes configure: no flag required for C11 support checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports __thread... yes checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports C11 _Thread_local... yes checking for the C compiler vendor... gnu checking for ANSI C header files... (cached) yes checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports -finline-functions... yes checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports -fno-strict-aliasing... yes configure: WARNING: -fno-strict-aliasing has been added to CFLAGS checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports __builtin_expect... yes checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports __builtin_prefetch... yes checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc supports __builtin_clz... yes checking for C optimization flags... -O3 -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Os -g0 -D_FORTIFY_SOURCE=1 -finline-functions -fno-strict-aliasing checking for Interix environment... no checking for C ident string support... #ident checking for int8_t... yes checking for uint8_t... yes checking for int16_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for int128_t... no checking for __int128... no checking for uint128_t... no checking for long long... yes checking for __float128... no checking for long double... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for intptr_t... yes checking for uintptr_t... yes checking for mode_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking size of _Bool... 1 checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of long... 4 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 8 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 16 checking size of void *... 4 checking size of size_t... 4 checking size of ssize_t... 4 checking size of ptrdiff_t... 4 checking size of wchar_t... 4 checking size of pid_t... 4 checking size of atomic_short... 2 checking size of atomic_int... 4 checking size of atomic_long... 4 checking size of atomic_llong... 8 checking alignment of bool... 1 checking alignment of int8_t... 1 checking alignment of int16_t... 2 checking alignment of int32_t... 4 checking alignment of int64_t... 8 checking alignment of char... 1 checking alignment of short... 2 checking alignment of wchar_t... 4 checking alignment of int... 4 checking alignment of long... 4 checking alignment of long long... 8 checking alignment of float... 4 checking alignment of double... 8 checking alignment of long double... 8 checking alignment of float _Complex... 4 checking alignment of double _Complex... 8 checking alignment of long double _Complex... 8 checking alignment of void *... 4 checking alignment of size_t... 4 checking for weak symbol support... yes checking for macro weak symbol support... yes checking for functional offsetof macro... yes *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... yes checking whether /tmp/instance-1/output-1/host/bin/mipsel-linux-g++ accepts -g... yes checking dependency style of /tmp/instance-1/output-1/host/bin/mipsel-linux-g++... none checking how to run the C++ preprocessor... /tmp/instance-1/output-1/host/bin/mipsel-linux-g++ -E checking for the C++ compiler vendor... gnu checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-g++ supports -finline-functions... yes configure: WARNING: -finline-functions has been added to CXXFLAGS checking if C and C++ are link compatible... yes checking for C++ optimization flags... -O3 -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Os -g0 -D_FORTIFY_SOURCE=1 -finline-functions checking size of bool... 1 checking alignment of bool... (cached) 1 *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... (cached) yes checking whether /tmp/instance-1/output-1/host/bin/mipsel-linux-g++ accepts -g... (cached) yes checking dependency style of /tmp/instance-1/output-1/host/bin/mipsel-linux-g++... (cached) none checking how to run the C++ preprocessor... /tmp/instance-1/output-1/host/bin/mipsel-linux-g++ -E checking if C++ compiler works... links (cross compiling) checking if /tmp/instance-1/output-1/host/bin/mipsel-linux-g++ supports -finline-functions... yes configure: WARNING: -finline-functions has been added to CXXFLAGS checking if C and C++ are link compatible... (cached) yes checking for C++ optimization flags... -O3 -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Os -g0 -D_FORTIFY_SOURCE=1 -finline-functions checking size of bool... (cached) 1 checking alignment of bool... (cached) 1 checking if able to build the MPI C++ bindings... no checking if want C++ exception handling... skipped *** Compiler characteristics checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(deprecated_argument)... yes checking for __attribute__(error)... yes checking for __attribute__(format)... yes checking for __attribute__(format_funcptr)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(noinline)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(noreturn_funcptr)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(visibility)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking for __attribute__(destructor)... yes checking for __attribute__(optnone)... no checking for __attribute__(extension)... yes checking for compiler familyid... 0 checking for compiler familyname... UNKNOWN checking for compiler version... 0 checking for compiler version_str... UNKNOWN *** Java MPI bindings checking if want Java bindings... no *** OpenSHMEM profiling checking if pshmem will be enabled... yes (weak symbols supported) *** Assembler checking dependency style of /tmp/instance-1/output-1/host/bin/mipsel-linux-gcc... none checking for BSD- or MS-compatible name lister (nm)... /tmp/instance-1/output-1/host/bin/mipsel-linux-nm checking the name lister (/tmp/instance-1/output-1/host/bin/mipsel-linux-nm) interface... BSD nm checking for fgrep... /usr/bin/grep -F checking for __atomic builtin atomics... no checking for __atomic_compare_exchange_n... no checking for __atomic_compare_exchange_n with -mcx16... no checking for __atomic_compare_exchange_n with -latomic... no checking for __sync_bool_compare_and_swap... no checking for __sync_bool_compare_and_swap with -mcx16... no checking for __sync_bool_compare_and_swap with -latomic... no checking for __sync builtin atomics... yes checking for 64-bit __sync builtin atomics... no checking for __sync_bool_compare_and_swap... no checking for __sync_bool_compare_and_swap with -mcx16... no checking for __sync_bool_compare_and_swap with -latomic... no checking if .proc/endp is needed... no checking directive for setting text section... .text checking directive for exporting symbols... .globl checking for objdump... /tmp/instance-1/output-1/host/bin/mipsel-linux-objdump checking if .note.GNU-stack is needed... no checking suffix for labels... : checking prefix for global symbol labels... checking prefix for lsym labels... .L checking prefix for function in .type... @ checking if .size is needed... yes checking if .align directive takes logarithmic value... yes checking for __sync builtin atomics... yes checking for 64-bit __sync builtin atomics... no checking for __sync_bool_compare_and_swap... no checking for __sync_bool_compare_and_swap with -mcx16... no checking for __sync_bool_compare_and_swap with -latomic... no checking for assembly architecture... UNSUPPORTED checking for builtin atomics... BUILTIN_SYNC *** Fortran compiler checking for mipsel-buildroot-linux-gnu-gfortran... /tmp/instance-1/output-1/host/bin/mipsel-linux-gfortran checking whether we are using the GNU Fortran compiler... yes checking whether /tmp/instance-1/output-1/host/bin/mipsel-linux-gfortran accepts -g... yes configure: WARNING: Open MPI now ignores the F77 and FFLAGS environment variables; only the FC and FCFLAGS environment variables are used. checking whether ln -s works... yes checking if Fortran compiler works... links (cross compiling) checking for extra arguments to build a shared library... none needed checking for /tmp/instance-1/output-1/host/bin/mipsel-linux-gfortran warnings flags... none checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .f90 files... none checking to see if Fortran compilers need additional linker flags... none checking external symbol convention... single underscore checking if C and Fortran are link compatible... yes checking to see if Fortran compiler likes the C++ exception flags... skipped (no C++ exceptions flags) checking to see if mpifort compiler needs additional linker flags... none checking if Fortran compiler supports CHARACTER... yes checking size of Fortran CHARACTER... (cached) 1 checking for C type corresponding to CHARACTER... char checking alignment of Fortran CHARACTER... (cached) 1 checking for corresponding KIND value of CHARACTER... C_SIGNED_CHAR checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1 checking if Fortran compiler supports LOGICAL... yes checking size of Fortran LOGICAL... (cached) 4 checking for C type corresponding to LOGICAL... int checking alignment of Fortran LOGICAL... (cached) 4 checking for corresponding KIND value of LOGICAL... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports LOGICAL*1... yes checking size of Fortran LOGICAL*1... (cached) 1 checking for C type corresponding to LOGICAL*1... char checking alignment of Fortran LOGICAL*1... (cached) 1 checking for corresponding KIND value of LOGICAL*1... C_SIGNED_CHAR checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1 checking if Fortran compiler supports LOGICAL*2... yes checking size of Fortran LOGICAL*2... (cached) 2 checking for C type corresponding to LOGICAL*2... short checking alignment of Fortran LOGICAL*2... (cached) 2 checking for corresponding KIND value of LOGICAL*2... C_SHORT checking KIND value of Fortran C_SHORT... (cached) 2 checking if Fortran compiler supports LOGICAL*4... yes checking size of Fortran LOGICAL*4... (cached) 4 checking for C type corresponding to LOGICAL*4... int checking alignment of Fortran LOGICAL*4... (cached) 4 checking for corresponding KIND value of LOGICAL*4... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports LOGICAL*8... yes checking size of Fortran LOGICAL*8... (cached) 8 checking for C type corresponding to LOGICAL*8... long long checking alignment of Fortran LOGICAL*8... (cached) 8 checking for corresponding KIND value of LOGICAL*8... C_LONG_LONG checking KIND value of Fortran C_LONG_LONG... (cached) 8 checking if Fortran compiler supports INTEGER... yes checking size of Fortran INTEGER... (cached) 4 checking for C type corresponding to INTEGER... int checking alignment of Fortran INTEGER... (cached) 4 checking for corresponding KIND value of INTEGER... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports INTEGER*1... yes checking size of Fortran INTEGER*1... (cached) 1 checking for C type corresponding to INTEGER*1... char checking alignment of Fortran INTEGER*1... (cached) 1 checking for corresponding KIND value of INTEGER*1... C_SIGNED_CHAR checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1 checking if Fortran compiler supports INTEGER*2... yes checking size of Fortran INTEGER*2... (cached) 2 checking for C type corresponding to INTEGER*2... short checking alignment of Fortran INTEGER*2... (cached) 2 checking for corresponding KIND value of INTEGER*2... C_SHORT checking KIND value of Fortran C_SHORT... (cached) 2 checking if Fortran compiler supports INTEGER*4... yes checking size of Fortran INTEGER*4... (cached) 4 checking for C type corresponding to INTEGER*4... int checking alignment of Fortran INTEGER*4... (cached) 4 checking for corresponding KIND value of INTEGER*4... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports INTEGER*8... yes checking size of Fortran INTEGER*8... (cached) 8 checking for C type corresponding to INTEGER*8... long long checking alignment of Fortran INTEGER*8... (cached) 8 checking for corresponding KIND value of INTEGER*8... C_LONG_LONG checking KIND value of Fortran C_LONG_LONG... (cached) 8 checking if Fortran compiler supports INTEGER*16... no checking if Fortran compiler supports REAL... yes checking size of Fortran REAL... (cached) 4 checking for C type corresponding to REAL... float checking alignment of Fortran REAL... (cached) 4 checking for corresponding KIND value of REAL... C_FLOAT checking KIND value of Fortran C_FLOAT... (cached) 4 checking if Fortran compiler supports REAL*2... no checking if Fortran compiler supports REAL*4... yes checking size of Fortran REAL*4... (cached) 4 checking for C type corresponding to REAL*4... float checking alignment of Fortran REAL*4... (cached) 4 checking for corresponding KIND value of REAL*4... C_FLOAT checking KIND value of Fortran C_FLOAT... (cached) 4 checking if Fortran compiler supports REAL*8... yes checking size of Fortran REAL*8... (cached) 8 checking for C type corresponding to REAL*8... double checking alignment of Fortran REAL*8... (cached) 8 checking for corresponding KIND value of REAL*8... C_DOUBLE checking KIND value of Fortran C_DOUBLE... (cached) 8 checking if Fortran compiler supports REAL*16... no checking for C type matching bit representation of REAL*16... skipped (no REAL*16) configure: WARNING: MPI_REAL16 and MPI_COMPLEX32 support have been disabled checking if Fortran compiler supports DOUBLE PRECISION... yes checking size of Fortran DOUBLE PRECISION... (cached) 8 checking for C type corresponding to DOUBLE PRECISION... double checking alignment of Fortran DOUBLE PRECISION... (cached) 8 checking for corresponding KIND value of DOUBLE PRECISION... C_DOUBLE checking KIND value of Fortran C_DOUBLE... (cached) 8 checking if Fortran compiler supports COMPLEX... yes checking size of Fortran COMPLEX... (cached) 8 checking for C type corresponding to COMPLEX... float _Complex checking alignment of Fortran COMPLEX... (cached) 4 checking for corresponding KIND value of COMPLEX... C_FLOAT_COMPLEX checking KIND value of Fortran C_FLOAT_COMPLEX... (cached) 4 checking if Fortran compiler supports COMPLEX*4... no checking if Fortran compiler supports COMPLEX*8... yes checking size of Fortran COMPLEX*8... (cached) 8 checking for C type corresponding to COMPLEX*8... float _Complex checking alignment of Fortran COMPLEX*8... (cached) 4 checking for corresponding KIND value of COMPLEX*8... C_FLOAT_COMPLEX checking KIND value of Fortran C_FLOAT_COMPLEX... (cached) 4 checking if Fortran compiler supports COMPLEX*16... yes checking size of Fortran COMPLEX*16... (cached) 16 checking for C type corresponding to COMPLEX*16... double _Complex checking alignment of Fortran COMPLEX*16... (cached) 8 checking for corresponding KIND value of COMPLEX*16... C_DOUBLE_COMPLEX checking KIND value of Fortran C_DOUBLE_COMPLEX... (cached) 8 checking if Fortran compiler supports COMPLEX*32... no checking if Fortran compiler supports DOUBLE COMPLEX... yes checking size of Fortran DOUBLE COMPLEX... (cached) 16 checking for C type corresponding to DOUBLE COMPLEX... double _Complex checking alignment of Fortran DOUBLE COMPLEX... (cached) 8 checking for corresponding KIND value of DOUBLE COMPLEX... C_DOUBLE_COMPLEX checking KIND value of Fortran C_DOUBLE_COMPLEX... (cached) 8 checking for max Fortran MPI handle index... 2147483647 checking Fortran value for .TRUE. logical type... (cached) 1 checking for correct handling of Fortran logical arrays... yes checking max supported Fortran array rank... 15 checking for the value of MPI_STATUS_SIZE... 5 Fortran INTEGERs checking KIND value of Fortran C_INT16_T... (cached) 2 checking KIND value of Fortran C_INT32_T... (cached) 4 checking KIND value of Fortran C_INT64_T... (cached) 8 checking if building Fortran mpif.h bindings... yes checking if Fortran compiler supports INTERFACE... yes checking if Fortran compiler supports ISO_FORTRAN_ENV... yes checking if Fortran compiler supports STORAGE_SIZE for relevant types... yes checking for Fortran compiler module include flag... -I checking Fortran compiler ignore TKR syntax... not cached; checking variants checking for Fortran compiler support of TYPE(*), DIMENSION(*)... no checking for Fortran compiler support of !GCC$ ATTRIBUTES NO_ARG_CHECK... yes checking Fortran compiler ignore TKR syntax... 1:type(*), dimension(*):!GCC$ ATTRIBUTES NO_ARG_CHECK :: checking if Fortran compiler supports ISO_C_BINDING... yes checking if building Fortran 'use mpi' bindings... yes checking if Fortran compiler supports SUBROUTINE BIND(C)... yes checking if Fortran compiler supports TYPE, BIND(C)... yes checking if Fortran compiler supports TYPE(type), BIND(C, NAME="name")... yes checking if Fortran compiler supports PROCEDURE... yes checking if Fortran compiler supports USE...ONLY... yes checking if Fortran compiler supports optional arguments... yes checking if Fortran compiler supports C_FUNLOC/TS 29113... yes checking if Fortran compiler supports PRIVATE... yes checking if Fortran compiler supports PROTECTED... yes checking if Fortran compiler supports ABSTRACT... yes checking if Fortran compiler supports ASYNCHRONOUS... yes checking size of Fortran type(test_mpi_handle)... (cached) 4 checking alignment of Fortran type(test_mpi_handle)... configure: error: Can not determine alignment of type(test_mpi_handle) when cross-compiling make: *** [package/pkg-generic.mk:260: /tmp/instance-1/output-1/build/openmpi-4.0.0/.stamp_configured] Error 1 make: Leaving directory '/tmp/instance-1/buildroot'